Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10609729 chr1:56334415 TAGAC/T 2.01E-7 174 25.7 25.67 13.27 KM Plot
PCPG rs1061647 chr16:89806063 G/C 0.000188 175 25.87 20.2 36.37 KM Plot
PCPG rs10656258 chr3:194784894 C/CAA 0.000144 170 24.38 28.47 10.07 KM Plot
PCPG rs1067089 chr17:3269862 G/C 0.00022 172 18.1 25.43 26.88 KM Plot
PCPG rs1067091 chr17:3240297 G/C 0.000207 172 18.1 25.87 27.2 KM Plot
PCPG rs1067094 chr17:3285471 A/T 0.000196 174 18.1 25.43 27.23 KM Plot
PCPG rs1067096 chr17:3247650 T/A 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs10671686 chr7:6637361 C/CAG 0.00014 172 17.62 24.7 25.4 KM Plot
PCPG rs1068692 chr17:3270284 A/G 0.00022 172 18.1 25.43 26.88 KM Plot
PCPG rs10714656 chr4:78947485 AT/A 0 176 2.93 25.87 25.28 KM Plot
PCPG rs10716873 chr8:6725694 TA/T 1.27E-6 174 8.2 18.2 27.23 KM Plot
PCPG rs10771 chr16:1749358 G/A 1.21E-11 176 25.53 19.3 4.52 KM Plot
PCPG rs10774295 chr12:5117900 A/C 2.75E-5 178 25.6 23.77 14.4 KM Plot
PCPG rs10774432 chr12:6565750 A/G 0.000285 173 19.3 25.4 25.87 KM Plot
PCPG rs10776494 chr4:78949738 C/T 0 176 2.93 25.87 25.28 KM Plot